Available Software on Talapas

Talapas provides hundreds of software packages for research computing, including many versions of each package to support compatibility and reproducibility. The table below lists all currently available modules that users can load on the system. To request additional packages to be installed centrally on Talapas, please submit a ticket.

Loading Software with LMOD

Talapas uses the LMOD module system to manage software environments. To load a package, you must specify both the package name and the version you want to use.

For example, to load version 2.1.0 of the ants package:

module load ants/2.1.0

And unload software with:

module unload ants/2.1.0

You can also search for available versions using:

module avail ants

See the How-to Use LMOD page for more details on using LMOD.

Available Software Packages

Module Name	Module Versions/Variants
`adapterremoval`	`2.1.7` `2.3.3`
`afni`	`24.1.22`
`alphafold3`	`3.0.0`
`amber`	`22`
`ancestry_hmm`	`0.92-old` `0.92`
`angsd`	`0.941-22-gc877e7f`
`ansible`	`9.3.0`
`ants`	`2.1.0` `2.5.1` `2.5.2`
`aocc`	`4.0.0` `5.0.0`
`aocl`	`4.2.0` `5.0.0`
`arcs`	`1.0.3`
`argweaver`	`0.8.1`
`armadillo`	`12.2.0`
`aspect`	`3.1.0`
`augustus`	`3.3.2`
`awscli`	`2.22.5`
`bamm`	`2.5.0`
`bamtools`	`2.4` `2.5.1`
`bayestraits`	`3.0.2`
`bbmap`	`38.16` `39.06`
`bcftools`	`1.18` `1.19`
`beagle`	`5.4`
`bedops`	`2.4.41`
`bedtools`	`2.25.0`
`bgc`	`1.0.3-patched` `1.0.3`
`bgchm`	`1.0.0`
`binutils`	`binutils`
`blast`	`2.14.1+` `2.2.29+`
`bowtie2`	`2.3.3` `2.4.4`
`brainiak`	`20240412`
`braker`	`2.0` `2.1.0` `2.1.3-WIP-20190826`
`breseq`	`0.31.0`
`bwa`	`0.7.17`
`cactus`	`2.8.1` `3.1.4`
`casa`	`6.7.0`
`cdbfasta`	`20191010`
`cellranger`	`3.0.2`
`clinfo`	`3.0.23`
`cmake`	`3.26.3`
`computem`	`11-jul-2021`
`comsol`	`5.6.0.401`
`conn-matlabR2024a`	`22v2407`
`counter`	`counter`
`cuda`	`11.8.0` `12.4.1` `13.0`
`cuda-opencl`	`12.4.1`
`cufflinks`	`2.2.1`
`cutadapt`	`4.9-20240729`
`cyrus-sasl`	`2.1.27`
`datamash`	`1.4`
`datascience`	`20200826` `20201104`
`dataselect`	`3.22`
`dcm2bids`	`3.1.1` `3.2.0`
`dcm2niix`	`1.0.20200331` `1.0.20230411` `15` `20240416`
`dcmtk`	`3.6.8`
`dcmtk-src`	`3.6.8`
`deepvariant`	`0.6.1` `1.1.0`
`diamond`	`0.8.22` `0.9.10`
`diploshic`	`diploshic`
`discoal`	`0.1.4`
`dmtcp`	`3.1.2`
`dorado`	`0.8.2`
`duc`	`1.4.3`
`duohmm`	`0.1.7`
`dynare`	`6.0`
`ea-utils`	`1.04.807`
`eggnog-mapper`	`20250122`
`eigen`	`3.4.0`
`energyplus`	`8.9.0`
`exonerate`	`2.4.0`
`fastprongs`	`20190625`
`fastqc`	`0.11.5`
`fastsimcoal2`	`26`
`ffmpeg`	`6.0.0`
`fftw3`	`3.3.10`
`fix`	`1.06`
`flash`	`1.2.11`
`flexbar`	`3.0.0`
`fmf`	`1.5.0`
`fmriprep`	`23.2.0` `23.2.1`
`freebayes`	`1.3.1`
`freesurfer`	`6.0.0` `7.2.0` `7.3.0` `7.3.2` `7.4.1` `8.2.0`
`fsl`	`5.0.10` `5.0.9` `6.0.1` `6.0.7.9` `6.0.7`
`fsleyes`	`0.23.0`
`fxtract`	`fxtract`
`gambit_bsm`	`2.4.4-miniconda3` `2.4.4`
`gamess`	`Jun302023R1`
`gamess-us`	`20180930-R3`
`gaussian`	`g09e01`
`gausssum`	`1.0.5`
`gcc`	`13.1.0` `8.5.0`
`gcta`	`1.94.4`
`Geneious`	`Geneious`
`genemark`	`4.33` `4.46` `4.71`
`genomethreader`	`1.7.0` `1.7.1`
`geos`	`3.6.2`
`gephi`	`0.9.2`
`globus`	`3.26.0`
`gmap-gsnap`	`2017-09-11` `2025-04-19`
`golang`	`1.12.1` `1.16.3` `1.21.3` `1.22.0` `1.24.0`
`grace`	`5.1.25`
`gromacs`	`2019.1` `2023.1` `2023.4` `2024.1-beta` `2024.1` `2024.3-plumed-2.11.0-cuda-12.4.1` `2024.3-plumed-2.11.0` `2024.3-plumed-2.9.3-cuda-12.4.1-pytorch`
`gurobi`	`9.5.1`
`haploview`	`4.2`
`hdf5`	`1.14.1` `1.8.13` `1.8.19`
`hmmer`	`3.1b2`
`homer`	`homer`
`hpcx`	`hpcx`
`hpl`	`hpl`
`hypre`	`2.28.0`
`ilastik`	`1.4.1`
`ilastik-gpu`	`1.4.1`
`intel-oneapi-advisor`	`2023.1.0`
`intel-oneapi-aitools-deeplearning`	`20240416`
`intel-oneapi-ccl`	`2021.9.0`
`intel-oneapi-compilers`	`2023.1.0`
`intel-oneapi-compilers-classic`	`2021.9.0`
`intel-oneapi-dal`	`2023.1.0`
`intel-oneapi-dnn`	`2023.1.0`
`intel-oneapi-dpct`	`2023.1.0`
`intel-oneapi-dpl`	`2022.1.0`
`intel-oneapi-inspector`	`2023.1.0`
`intel-oneapi-ipp`	`2021.8.0`
`intel-oneapi-ippcp`	`2021.7.0`
`intel-oneapi-itac`	`2021.8.0`
`intel-oneapi-mkl`	`2023.1.0`
`intel-oneapi-mpi`	`2021.9.0`
`intel-oneapi-tbb`	`2021.9.0`
`intel-oneapi-vpl`	`2023.1.0`
`intel-oneapi-vtune`	`2023.1.0`
`interproscan`	`5.27-66.0`
`ior`	`4.0.0`
`issm`	`4.21` `4.24`
`itksnap`	`3.6.0`
`java`	`1.8.0` `17.0.10`
`jq`	`1.6`
`julia`	`0.6.2` `1.1.1` `1.10.3` `1.3.1` `1.5.1` `1.6.3` `1.8.5`
`julia-singularity`	`20220318`
`jupyter`	`4.1.6`
`jupyter-datascience`	`20240801`
`jupyter-pymer4`	`0.7.1`
`krona`	`2.7`
`lammps`	`20220623.3`
`latex`	`20250228`
`lcmlkin`	`20200212`
`libconfig`	`1.7.3`
`libra`	`1.1.2`
`libvips`	`8.7.1`
`libxc`	`5.2.3`
`llava`	`1.7.0`
`lobster`	`5.1.1`
`macs3`	`3.0.3-20250717`
`mafft`	`7.313`
`maker`	`2.31.9`
`mango`	`4.1`
`Mathematica`	`11.3` `12.0`
`matlab`	`R2016b` `R2017b` `R2017b_pas` `R2018b` `R2019b` `R2020b` `R2021a` `R2022a` `R2024a`
`maven`	`3.5.0`
`maxssmap`	`v1`
`merlin`	`1.1.2`
`mesos`	`1.9.0`
`metabat`	`2.12.1`
`mfix`	`25.3`
`miniconda-t2`	`20230523`
`miniconda3`	`20240410` `20260319`
`miniforge3`	`20240410` `20260327`
`mixtral`	`20240315`
`moose`	`20231205`
`moose-dev-gcc`	`20220124`
`mpi`	`mpi`
`mpi4py`	`3.0`
`mplus`	`demo`
`mptp`	`0.2.4`
`MRIConvert`	`2.1.0`
`mricrogl`	`1.2.20210624`
`mriqc`	`0.16.1` `24.0.0-conda` `24.0.0` `24.0.2`
`mrtrix`	`3.0.4` `3.0_RC3` `MRtrix3Tissue`
`mrtrix-singularity`	`3.0_RC3`
`mseedindex`	`2.7.1`
`msolve`	`0.4.4`
`mujoco`	`2.2.1`
`muscle`	`3.8.31`
`namd`	`2.13-multicore`
`ncbi_cxx`	`17` `18` `21`
`ncview`	`2.1.11`
`neovim`	`0.9.1`
`netcdf`	`4.9.2` `4.9.3-intel` `4.9.3`
`netcdf-fortran`	`4.6.1` `4.6.2-intel`
`ngsolve`	`6.2.2102`
`ngsrelate`	`v2`
`nipype`	`1.8.6-20240503` `nipype-old` `nipype`
`node`	`20.16.0`
`NonLinLoc`	`20221102`
`nvhpc`	`25.7` `25.9`
`ondemand-jupyter`	`ondemand-jupyter`
`oneapi-level-zero`	`1.9.9`
`openbabel`	`3.1.1`
`openblas`	`0.3.23`
`OpenDX`	`4.4.4`
`openfoam`	`12`
`openmpi`	`4.1.5`
`orca`	`6.0.1` `6.1.0`
`orfm`	`0.7.1`
`ovito`	`3.13.1`
`papi`	`5.5.1`
`parallel`	`20241222`
`paraview`	`5.11.0-RC2` `5.11.0` `5.13.0` `5.13.1` `5.7.0` `5.8.1` `5.9.0-RC2` `5.9.0` `6.0.0`
`pasa`	`2.3.3`
`pbjelly`	`15.8.24`
`pear`	`0.9.10`
`perl`	`5.24.2`
`pgi`	`18` `19`
`pixi`	`0.65.0`
`plink`	`plink`
`plumed`	`2.9.2`
`pplacer`	`1.1`
`prl`	`1`
`proj`	`6.1.1`
`prosplign`	`20180810`
`psass`	`3.1.0-20240411` `3.1.0-20240424` `3.1.0`
`psmc`	`0.6.5`
`pycharm`	`2020.1.2` `2022.3`
`pyfftw3`	`3.3.10`
`pylith`	`4.0.0`
`pymer4`	`20240321` `20240410`
`pypi-env`	`pypi-env`
`pypi-packages`	`pypi-packages`
`python`	`2.7.18`
`python2`	`2.7.13` `2.7.14-old` `2.7.14` `2.7.15` `2.7.17`
`python3`	`3.10.13` `3.11.4` `3.6.1` `3.6.5` `3.6.7` `3.6.9` `3.7.5`
`python3-t2-test`	`3.7.5`
`pytorch`	`2.1.2`
`pytorch-refinegnn`	`20240820`
`pytorch-thermompnn`	`2.1.2`
`quantum-espresso`	`7.1`
`R`	`3.4.2-lcni` `4.3.2` `4.3.3` `4.4.2`
`racs-spack-t2-test`	`racs-spack-t2-test`
`rclone`	`1.38` `1.52.2` `1.66.0` `1.70.3`
`RECON`	`1.08`
`RepeatMasker`	`4.0.7racs1`
`RepeatModeler`	`1.0.10`
`RepeatScout`	`1.0.5`
`RFdiffusion1`	`RFdiffusion1`
`rfdiffusion2`	`20250919`
`ribodetector`	`0.3.1`
`ripser-plusplus`	`20200806`
`rmblastn`	`2.2.28`
`rosetta`	`3.14`
`rstudio`	`2022.07.1+554` `2023.12.1+402` `2024.04.1+748-condaGLIBX` `2024.04.1+748-gdalgeos-20250121` `2024.04.1+748` `2024.09.1+394` `base` `rstudio-cont`
`rstudio-bare`	`1.3` `2022.07.1+554`
`rstudio-server`	`2026.01.1+403`
`ruby`	`2.4.3`
`rust`	`1.82`
`sagemath`	`8.0`
`sambamba`	`0.7.0`
`samtools`	`1.19`
`skbio`	`0.6.0-20240429`
`slurm`	`23.11.1`
`smrtlink`	`5.1.0`
`snakemake`	`1.0.0`
`sortmerna`	`4.3.7`
`spack-rhel8`	`spack-rhel8`
`spades`	`3.13.0` `3.15.3`
`specfem3d`	`20190918-devel` `3.0-gpu`
`spines`	`1.15`
`stable-diffusion`	`stable-diffusion`
`stacks`	`2.0b` `2.68`
`star`	`2.7.11b`
`stata`	`17` `18`
`strace`	`4.26`
`subread`	`1.6.0` `2.0.6`
`sw4`	`3.0.0`
`tau`	`2.33.2`
`tensorflow-relernn5`	`20240904`
`tensorflow`	`tensorflow`
`tensorflow2`	`tensorflow2`
`test-nbgrader`	`test-nbgrader`
`tiptop`	`2.3`
`tmux`	`3.4`
`transpose`	`2.0`
`transposonpsi`	`def`
`trf`	`trf`
`trim_galore`	`0.6.10`
`ucsc-userapps`	`20191024`
`usearch`	`11.0` `8.0`
`vasp`	`agnelab-6.5.1` `nazingroup-6.5.1` `racs-6.5.1`
`vaspkit`	`1.5.1`
`vcftools`	`0.1.17`
`velvet`	`20240416`
`vmd`	`1.9.3`
`wannier90`	`3.1.0`
`wps`	`4.5`
`wrf`	`4.4.2`
`xtb`	`6.2.1`
`yambo`	`5.1.1`