Available Software on Talapas

Talapas provides hundreds of software packages for research computing, including many versions of each package to support compatibility and reproducibility. The table below lists all currently available modules that users can load on the system.

Loading Software with LMOD

Talapas uses the LMOD module system to manage software environments. To load a package, you must specify both the package name and the version you want to use.

For example, to load version 2.1.0 of the ants package:

module load ants/2.1.0

And unload software with:

module unload ants/2.1.0

You can also search for available versions using:

module avail ants

Available Software Packages

Module	Versions
`Geneious`	`Geneious`
`MRIConvert`	`MRIConvert/2.1.0`
`Mathematica`	`Mathematica/11.3, Mathematica/12.0`
`NonLinLoc`	`NonLinLoc/20221102`
`OpenDX`	`OpenDX/4.4.4`
`R`	`R/3.4.2-lcni, R/4.3.2, R/4.3.3, R/4.4.2`
`RECON`	`RECON/1.08`
`RFdiffusion1`	`RFdiffusion1/RFdiffusion1`
`RepeatMasker`	`RepeatMasker/4.0.7racs1`
`RepeatModeler`	`RepeatModeler/1.0.10`
`RepeatScout`	`RepeatScout/1.0.5`
`adapterremoval`	`adapterremoval/2.1.7, adapterremoval/2.3.3`
`afni`	`afni/24.1.22`
`alphafold3`	`alphafold3/3.0.0`
`amber`	`amber/22`
`ancestry_hmm`	`ancestry_hmm/0.92-old, ancestry_hmm/0.92`
`angsd`	`angsd/0.941-22-gc877e7f`
`ansible`	`ansible/9.3.0`
`ants`	`ants/2.1.0, ants/2.5.1, ants/2.5.2`
`aocc`	`aocc/4.0.0, aocc/5.0.0`
`aocl`	`aocl/4.2.0, aocl/5.0.0`
`arcs`	`arcs/1.0.3`
`argweaver`	`argweaver/0.8.1`
`armadillo`	`armadillo/12.2.0`
`aspect`	`aspect/3.1.0`
`augustus`	`augustus/3.3.2`
`awscli`	`awscli/2.22.5`
`bamm`	`bamm/2.5.0`
`bamtools`	`bamtools/2.4, bamtools/2.5.1`
`bayestraits`	`bayestraits/3.0.2`
`bbmap`	`bbmap/38.16, bbmap/39.06`
`bcftools`	`bcftools/1.18, bcftools/1.19`
`beagle`	`beagle/5.4`
`bedops`	`bedops/2.4.41`
`bedtools`	`bedtools/2.25.0`
`bgc`	`bgc/1.0.3-patched, bgc/1.0.3`
`bgchm`	`bgchm/1.0.0`
`blast`	`blast/2.2.29+, blast/2.14.1+`
`bowtie2`	`bowtie2/2.3.3, bowtie2/2.4.4`
`brainiak`	`brainiak/20240412`
`braker`	`braker/2.0, braker/2.1.0, braker/2.1.3-WIP-20190826`
`breseq`	`breseq/0.31.0`
`bwa`	`bwa/0.7.17`
`cactus`	`cactus/2.8.1`
`casa`	`casa/6.7.0`
`cdbfasta`	`cdbfasta/20191010`
`cellranger`	`cellranger/3.0.2`
`clinfo`	`clinfo/3.0.23`
`cmake`	`cmake/3.26.3`
`computem`	`computem/11-jul-2021`
`comsol`	`comsol/5.6.0.401`
`counter`	`counter`
`cuda`	`cuda/11.8.0, cuda/12.4.1`
`cuda-opencl`	`cuda-opencl/12.4.1`
`cufflinks`	`cufflinks/2.2.1`
`cutadapt`	`cutadapt/4.9-20240729`
`cyrus-sasl`	`cyrus-sasl/2.1.27`
`datamash`	`datamash/1.4`
`datascience`	`datascience/20200826, datascience/20201104`
`dataselect`	`dataselect/3.22`
`dcm2bids`	`dcm2bids/3.1.1, dcm2bids/3.2.0`
`dcm2niix`	`dcm2niix/1.0.20200331, dcm2niix/1.0.20230411, dcm2niix/15, dcm2niix/20240416`
`dcmtk`	`dcmtk/3.6.8`
`dcmtk-src`	`dcmtk-src/3.6.8`
`deepvariant`	`deepvariant/0.6.1, deepvariant/1.1.0`
`diamond`	`diamond/0.8.22, diamond/0.9.10`
`diploshic`	`diploshic`
`discoal`	`discoal/0.1.4`
`dmtcp`	`dmtcp/3.1.2`
`dorado`	`dorado/0.8.2`
`duc`	`duc/1.4.3`
`duohmm`	`duohmm/0.1.7`
`dynare`	`dynare/6.0`
`ea-utils`	`ea-utils/1.04.807`
`eggnog-mapper`	`eggnog-mapper/20250122`
`eigen`	`eigen/3.4.0`
`energyplus`	`energyplus/8.9.0`
`exonerate`	`exonerate/2.4.0`
`fastprongs`	`fastprongs/20190625`
`fastqc`	`fastqc/0.11.5`
`fastsimcoal2`	`fastsimcoal2/26`
`ffmpeg`	`ffmpeg/6.0.0`
`fftw3`	`fftw3/3.3.10`
`fix`	`fix/1.06`
`flash`	`flash/1.2.11`
`flexbar`	`flexbar/3.0.0`
`fmf`	`fmf/1.5.0`
`fmriprep`	`fmriprep/23.2.0, fmriprep/23.2.1`
`freebayes`	`freebayes/1.3.1`
`freesurfer`	`freesurfer/6.0.0, freesurfer/7.2.0, freesurfer/7.3.0, freesurfer/7.3.2, freesurfer/7.4.1`
`fsl`	`fsl/5.0.9, fsl/5.0.10, fsl/6.0.1, fsl/6.0.7, fsl/6.0.7.9`
`fsleyes`	`fsleyes/0.23.0`
`fxtract`	`fxtract`
`gambit_bsm`	`gambit_bsm/2.4.4-miniconda3, gambit_bsm/2.4.4`
`gamess`	`gamess/Jun302023R1`
`gamess-us`	`gamess-us/20180930-R3`
`gaussian`	`gaussian/g09e01`
`gcc`	`gcc/8.5.0, gcc/13.1.0`
`gcta`	`gcta/1.94.4`
`genemark`	`genemark/4.33, genemark/4.46, genemark/4.71`
`genomethreader`	`genomethreader/1.7.0, genomethreader/1.7.1`
`geos`	`geos/3.6.2`
`gephi`	`gephi/0.9.2`
`globus`	`globus/3.26.0`
`gmap-gsnap`	`gmap-gsnap/2017-09-11, gmap-gsnap/2025-04-19`
`golang`	`golang/1.12.1, golang/1.16.3, golang/1.21.3, golang/1.22.0, golang/1.24.0`
`grace`	`grace/5.1.25`
`gromacs`	`gromacs/2019.1, gromacs/2023.1, gromacs/2023.4, gromacs/2024.1, gromacs/2024.3-plumed-2.9.3-cuda-12.4.1-pytorch, gromacs/2024.3-plumed-2.11.0-cuda-12.4.1, gromacs/2024.3-plumed-2.11.0`
`gurobi`	`gurobi/9.5.1`
`haploview`	`haploview/4.2`
`hdf5`	`hdf5/1.8.13, hdf5/1.8.19, hdf5/1.14.1`
`hmmer`	`hmmer/3.1b2`
`homer`	`homer`
`hpcx`	`hpcx/v1.8.0-ompi-v2.x, hpcx/v1.8.0-stack`
`hypre`	`hypre/2.28.0`
`intel-oneapi-advisor`	`intel-oneapi-advisor/2023.1.0`
`intel-oneapi-aitools-deeplearning`	`intel-oneapi-aitools-deeplearning/20240416`
`Intel AI Tools`	`Deep Learning. https://www.intel.com/content/www/us/en/developer/tools/oneapi/ai-tools-selector.html`
`intel-oneapi-ccl`	`intel-oneapi-ccl/2021.9.0`
`intel-oneapi-compilers`	`intel-oneapi-compilers/2023.1.0`
`intel-oneapi-compilers-classic`	`intel-oneapi-compilers-classic/2021.9.0`
`intel-oneapi-dal`	`intel-oneapi-dal/2023.1.0`
`intel-oneapi-dnn`	`intel-oneapi-dnn/2023.1.0`
`intel-oneapi-dpct`	`intel-oneapi-dpct/2023.1.0`
`intel-oneapi-dpl`	`intel-oneapi-dpl/2022.1.0`
`intel-oneapi-inspector`	`intel-oneapi-inspector/2023.1.0`
`intel-oneapi-ipp`	`intel-oneapi-ipp/2021.8.0`
`intel-oneapi-ippcp`	`intel-oneapi-ippcp/2021.7.0`
`intel-oneapi-itac`	`intel-oneapi-itac/2021.8.0`
`intel-oneapi-mkl`	`intel-oneapi-mkl/2023.1.0`
`intel-oneapi-mpi`	`intel-oneapi-mpi/2021.9.0`
`intel-oneapi-tbb`	`intel-oneapi-tbb/2021.9.0`
`intel-oneapi-vpl`	`intel-oneapi-vpl/2023.1.0`
`intel-oneapi-vtune`	`intel-oneapi-vtune/2023.1.0`
`interproscan`	`interproscan/5.27-66.0`
`issm`	`issm/4.21, issm/4.24`
`itksnap`	`itksnap/3.6.0`
`java`	`java/1.8.0, java/17.0.10`
`jq`	`jq/1.6`
`julia`	`julia/0.6.2, julia/1.1.1, julia/1.3.1, julia/1.5.1, julia/1.6.3, julia/1.8.5, julia/1.10.3`
`julia-singularity`	`julia-singularity/20220318`
`jupyter`	`jupyter/4.1.6`
`jupyter-datascience`	`jupyter-datascience/20240801`
`jupyter-pymer4`	`jupyter-pymer4/0.7.1`
`krona`	`krona/2.7`
`lammps`	`lammps/20220623.3`
`latex`	`latex/20250228`
`lcmlkin`	`lcmlkin/20200212`
`libconfig`	`libconfig/1.7.3`
`libra`	`libra/1.1.2`
`libvips`	`libvips/8.7.1`
`libxc`	`libxc/5.2.3`
`llava`	`llava/1.7.0`
`lmod`	`lmod`
`Lmod`	`An Environment Module System`
`lobster`	`lobster/5.1.1`
`macs3`	`macs3/3.0.3-20250717`
`mafft`	`mafft/7.313`
`maker`	`maker/2.31.9`
`mango`	`mango/4.1`
`matlab`	`matlab/R2016b, matlab/R2017b_pas, matlab/R2017b, matlab/R2018b, matlab/R2019b, matlab/R2020b, matlab/R2021a, matlab/R2022a, matlab/R2024a`
`maven`	`maven/3.5.0`
`maxssmap`	`maxssmap/v1`
`merlin`	`merlin/1.1.2`
`mesos`	`mesos/1.9.0`
`metabat`	`metabat/2.12.1`
`mfix`	`mfix/23.2, mfix/24.1.1`
`miniconda-t2`	`miniconda-t2/20230523`
`miniconda3`	`miniconda3/20240410`
`miniforge3`	`miniforge3/20240410`
`mixtral`	`mixtral/20240315`
`moose`	`moose/20231205`
`moose-dev-gcc`	`moose-dev-gcc/20220124`
`mpi/aocc/5.0.0/openmpi`	`mpi/aocc/5.0.0/openmpi/4.1.6`
`mpi/gcc/13.1.0/mpich`	`mpi/gcc/13.1.0/mpich/4.1.1`
`mpi/gcc/13.1.0/openmpi`	`mpi/gcc/13.1.0/openmpi/4.1.6`
`mpi/gcc/8.5.0/mpich`	`mpi/gcc/8.5.0/mpich/4.1.1`
`mpi4py`	`mpi4py/3.0`
`mpich`	`mpich/4.1.1`
`mplus`	`mplus/demo`
`mptp`	`mptp/0.2.4`
`mricrogl`	`mricrogl/1.2.20210624`
`mriqc`	`mriqc/0.16.1, mriqc/24.0.0-conda, mriqc/24.0.0, mriqc/24.0.2`
`mrtrix`	`mrtrix/MRtrix3Tissue, mrtrix/3.0_RC3, mrtrix/3.0.4`
`mrtrix-singularity`	`mrtrix-singularity/3.0_RC3`
`mseedindex`	`mseedindex/2.7.1`
`msolve`	`msolve/0.4.4`
`mujoco`	`mujoco/2.2.1`
`muscle`	`muscle/3.8.31`
`namd`	`namd/2.13-multicore`
`ncbi_cxx`	`ncbi_cxx/17, ncbi_cxx/18, ncbi_cxx/21`
`ncview`	`ncview/2.1.11`
`neovim`	`neovim/0.9.1`
`netcdf`	`netcdf/4.9.2, netcdf/4.9.3-intel, netcdf/4.9.3`
`netcdf-fortran`	`netcdf-fortran/4.6.1, netcdf-fortran/4.6.2-intel`
`ngsolve`	`ngsolve/6.2.2102`
`ngsrelate`	`ngsrelate/v2`
`nipype`	`nipype/nipype-old, nipype/nipype, nipype/1.8.6-20240503`
`node`	`node/20.16.0`
`nvhpc`	`nvhpc/22.2, nvhpc/25.7`
`ondemand-jupyter`	`ondemand-jupyter`
`oneapi-level-zero`	`oneapi-level-zero/1.9.9`
`openbabel`	`openbabel/3.1.1`
`openblas`	`openblas/0.3.23`
`openfoam`	`openfoam/12`
`openmpi`	`openmpi/2.1, openmpi/3.1, openmpi/4.1.5, openmpi/4.1.6`
`orca`	`orca/6.0.1, orca/6.1.0`
`orfm`	`orfm/0.7.1`
`ovito`	`ovito/3.13.1`
`papi`	`papi/5.5.1`
`parallel`	`parallel/20241222`
`paraview`	`paraview/5.7.0, paraview/5.8.1, paraview/5.9.0-RC2, paraview/5.9.0, paraview/5.11.0-RC2, paraview/5.11.0, paraview/5.13.0, paraview/5.13.1, paraview/6.0.0`
`pasa`	`pasa/2.3.3`
`pbjelly`	`pbjelly/15.8.24`
`pear`	`pear/0.9.10`
`perl`	`perl/5.24.2`
`pgi`	`pgi/18, pgi/19`
`plink`	`plink`
`plumed`	`plumed/2.9.2`
`pplacer`	`pplacer/1.1`
`prl`	`prl/1`
`proj`	`proj/6.1.1`
`prosplign`	`prosplign/20180810`
`psass`	`psass/3.1.0, psass/3.1.0-20240411, psass/3.1.0-20240424`
`psmc`	`psmc/0.6.5`
`pycharm`	`pycharm/2020.1.2, pycharm/2022.3`
`pyfftw3`	`pyfftw3/3.3.10`
`pylith`	`pylith/4.0.0`
`pymer4`	`pymer4/20240321, pymer4/20240410`
`pypi-env`	`pypi-env/pypi-env`
`pypi-packages`	`pypi-packages/pypi-packages`
`python`	`python/2.7.18`
`python2`	`python2/2.7.13, python2/2.7.14-old, python2/2.7.14, python2/2.7.15, python2/2.7.17`
`python3`	`python3/3.6.1, python3/3.6.5, python3/3.6.7, python3/3.6.9, python3/3.7.5, python3/3.10.13, python3/3.11.4`
`python3-t2-test`	`python3-t2-test/3.7.5`
`pytorch`	`pytorch/2.1.2`
`pytorch-refinegnn`	`pytorch-refinegnn/20240820`
`pytorch-thermompnn`	`pytorch-thermompnn/2.1.2`
`quantum-espresso`	`quantum-espresso/7.1`
`racs-spack-t2-test`	`racs-spack-t2-test`
`rclone`	`rclone/1.38, rclone/1.52.2, rclone/1.66.0, rclone/1.70.3`
`rfdiffusion2`	`rfdiffusion2/20250919`
`ribodetector`	`ribodetector/0.3.1`
`ripser-plusplus`	`ripser-plusplus/20200806`
`rmblastn`	`rmblastn/2.2.28`
`rosetta`	`rosetta/3.14`
`rstudio`	`rstudio/base, rstudio/rstudio-cont, rstudio/2022.07.1+554, rstudio/2023.12.1+402, rstudio/2024.04.1+748-condaGLIBX, rstudio/2024.04.1+748-gdalgeos-20250121, rstudio/2024.04.1+748, ...`
`rstudio-bare`	`rstudio-bare/1.3, rstudio-bare/2022.07.1+554`
`ruby`	`ruby/2.4.3`
`rust`	`rust/1.82`
`sagemath`	`sagemath/8.0`
`sambamba`	`sambamba/0.7.0`
`samtools`	`samtools/1.19`
`settarg`	`settarg`
`skbio`	`skbio/0.6.0-20240429`
`slurm`	`slurm/23.11.1`
`smrtlink`	`smrtlink/5.1.0`
`snakemake`	`snakemake/1.0.0`
`sortmerna`	`sortmerna/4.3.7`
`spack-rhel8`	`spack-rhel8`
`spades`	`spades/3.13.0, spades/3.15.3`
`specfem3d`	`specfem3d/3.0-gpu, specfem3d/20190918-devel`
`spines`	`spines/1.15`
`stable-diffusion`	`stable-diffusion/stable-diffusion`
`stacks`	`stacks/2.0b, stacks/2.68`
`star`	`star/2.7.11b`
`stata`	`stata/17, stata/18`
`strace`	`strace/4.26`
`subread`	`subread/1.6.0, subread/2.0.6`
`sw4`	`sw4/3.0.0`
`tau`	`tau/2.33.2`
`tensorflow`	`tensorflow`
`tensorflow-relernn5`	`tensorflow-relernn5/20240904`
`tensorflow2`	`tensorflow2`
`test-nbgrader`	`test-nbgrader`
`tiptop`	`tiptop/2.3`
`tmux`	`tmux/3.4`
`transpose`	`transpose/2.0`
`transposonpsi`	`transposonpsi/def`
`trf`	`trf`
`trim_galore`	`trim_galore/0.6.10`
`ucsc-userapps`	`ucsc-userapps/20191024`
`usearch`	`usearch/8.0, usearch/11.0`
`vasp`	`vasp/agnelab-6.5.1, vasp/nazingroup-6.5.1, vasp/racs-6.5.1`
`vaspkit`	`vaspkit/1.5.1`
`vcftools`	`vcftools/0.1.17`
`velvet`	`velvet/20240416`
`vmd`	`vmd/1.9.3`
`wannier90`	`wannier90/3.1.0`
`wps`	`wps/4.5`
`wrf`	`wrf/4.4.2`
`xtb`	`xtb/6.2.1`
`yambo`	`yambo/5.1.1`